Changelog

0.4.2

3 March 2022

Uncategorized Changes

  • Fix asymmetry of last children in apical diametrizer (Alexis Arnaudon - #16)

0.4.1

23 February 2022

  • Update the signature of build_diameters.build so it can be passed directly to NeuroTS (Adrien Berchet - #15)

  • Add codespell in lint (Adrien Berchet - #14)

  • Fix badges (Adrien Berchet - #13)

0.3.3

1 December 2021

0.3.2

1 December 2021

  • Setup RTD #9

0.3.1

1 December 2021

  • Add long description in setup.py #7

0.3.0

1 December 2021

  • Fix CITATION.cff file #6

  • Change license and open the sources #1

  • Setup auto-changelog (Adrien Berchet - f7c4e02)

0.2.6

18 October 2021

  • Migration to GitLab (Adrien Berchet - 9009eb6)

  • Diameter smoother (arnaudon - 2345201)

0.2.5

30 August 2021

  • Update NeuroM dependency to 3.0.0 (aleksei sanin - b9c079c)

0.2.4

26 May 2021

  • Improve neurite type handling in build diameters and use random number generators (Adrien Berchet - 7037ecc)

  • No more use NeuroM.Population (Adrien Berchet - df17bf8)

  • Can use str or morphio neurite type to build diameters (Adrien Berchet - 29b7238)

0.2.3

4 May 2021

  • Fix schema (Adrien Berchet - fc0e63c)

0.2.2

30 April 2021

  • Install missing JSON files (Adrien Berchet - bdb1145)

0.2.1

30 April 2021

  • Fix schema and improve tests (Adrien Berchet - b0df7fd)

0.2.0

29 April 2021

  • Remove asymmetry_threshold (Adrien Berchet - 46716c1)

  • Update NeuroM requirement (Adrien Berchet - a42f139)

0.1.13

29 April 2021

  • Add JSON schemas and validation functions for distributions and parameters (Adrien Berchet - f62f7ef)

  • Add documentation (Adrien Berchet - b1c4790)

  • Add version attribute (Adrien Berchet - 5ace372)

0.1.12

20 April 2021

  • Upgrade to neurom2.0 (arnaudon - ec75713)

  • Release (arnaudon - 2c590b2)

0.1.11

18 March 2021

  • Seaborn optional (arnaudon - b922451)

  • Trailing (arnaudon - 486c6c2)

  • Bump version for real (arnaudon - 8660830)

  • Bump version (arnaudon - bbf2f48)

0.1.10

15 March 2021

  • Add axon diametrizer (arnaudon - f35b5a5)

  • Release (arnaudon - ce3d59d)

0.1.9

22 January 2021

  • Fix tests with scipy>=1.6 (Adrien Berchet - a554751)

  • Remove h5py requirement (Adrien Berchet - 27e5df4)

0.1.8

14 January 2021

  • Improve test coverage and minor fixes (Adrien Berchet - 10f0b78)

  • Use apical section IDs to compute asymmetric diameters (Adrien Berchet - c6eb579)

0.1.7

13 October 2020

  • Improved violin plots (arnaudon - a67994c)

  • Cumulative plot update (arnaudon - b9b83cd)

  • Small updates (arnaudon - 96fbc0d)

  • Remove deprecation in mean diameters (arnaudon - da31e07)

  • Fix small lint (arnaudon - 6aba453)

  • Bump version (arnaudon - 8c4214f)

  • Remove black check (arnaudon - 7a9f4b6)

  • Tox py3 (arnaudon - 0eca2bb)

0.1.6

6 April 2020

0.1.4

31 March 2020

  • Updated docstring (Alexis Arnaudon - 79b58dc)

  • Unleash your reviews, v2 (arnaudon - 0153dc6)

  • Updated docstring (Alexis Arnaudon - 75620d9)

  • Bump version (arnaudon - 2af25aa)

0.1.2

27 March 2020

  • Small modifs for region-grower compat. (arnaudon - 3702dcb)

  • 0.1.2 release (arnaudon - a62b6de)

0.1.1

27 March 2020

  • Refactor + build with morphio + neurom[master] (Alexis Arnaudon - ff791aa)

  • Basic build test (arnaudon - 7052b0a)

  • Pathlib + small removed types/io (Alexis Arnaudon - 1a8749a)

  • Better taper function (Alexis Arnaudon - bf7046c)

  • Tox update (arnaudon - 03227dd)

  • 0.1.1 release (arnaudon - b09016c)

  • New version (arnaudon - ecd91d5)

0.0.15

12 March 2020

  • Speed up with caching (Alexis Arnaudon - ba116dd)

  • Exception + update example (arnaudon - ef46fd0)

  • Small updates (arnaudon - 02837f9)

  • Remove forbidden + plot diff (arnaudon - a948129)

  • Small bug (arnaudon - fab09ac)

  • Plot update (arnaudon - eaba651)

  • Small update for bb5 (arnaudon - 7772283)

  • Build accepts morphio object (arnaudon - fddf09d)

  • Small changes (arnaudon - 7e2f070)

  • Add exception.py file (arnaudon - 50cd70f)

  • Bug in pool.map (Alexis Arnaudon - ba99578)

  • New release (arnaudon - cf336da)

0.0.13

14 February 2020

  • Plotting + neurite in build (Alexis Arnaudon - 73ff47e)

  • New version (Alexis Arnaudon - b3d5aa4)

0.0.11

13 February 2020

  • Validation + M1-> generic (Alexis Arnaudon - d5dc3a1)

  • Move plotting import (Alexis Arnaudon - ba03d96)

  • New release (Alexis Arnaudon - fa64106)

  • Invalid value warning disabled (Alexis Arnaudon - 5a8cdc5)

  • Disable warning divide (Alexis Arnaudon - e76f524)

0.0.9

4 February 2020

  • Validation/analysis plot app merged (Alexis Arnaudon - f22a5ac)

  • New release (Alexis Arnaudon - a45a3b7)

  • Merge “worker class + logging” (Alexis Arnaudon - 3bbd8e3)

  • Worker class + logging (Alexis Arnaudon - b0bf420)

  • Small updated for TNS (Alexis Arnaudon - e1c0cff)

0.0.7

31 January 2020

  • Small update to fit tns code (Alexis Arnaudon - 0b28a33)

  • Matplotlib Agg (Alexis Arnaudon - 5c42959)

  • New release (Alexis Arnaudon - 139d874)

  • New release (Alexis Arnaudon - 4b68ff6)

0.0.5

27 January 2020

  • List again (Alexis Arnaudon - f9a7c6c)

  • Small bug (Alexis Arnaudon - bad6069)

  • New release (Alexis Arnaudon - 2677c28)

  • New release (Alexis Arnaudon - 3f0be76)

0.0.4

27 January 2020

  • List thing (Alexis Arnaudon - 87f1591)

  • New release (Alexis Arnaudon - 431fade)

0.0.3

27 January 2020

  • Substitution + exception from morphio (Alexis Arnaudon - 0d4f729)

  • New release (Alexis Arnaudon - c558d67)

0.0.2

27 January 2020

  • Code cleaning (Alexis Arnaudon - 262c6af)

  • Simplfied build_diameter (Alexis Arnaudon - a2d887a)

  • Generating model to test with diameter-check (arnaudon - 6920a44)

  • many updates (arnaudon - 9e52c34)

  • Morphio -> neurom + file reshaping (arnaudon - 0673b93)

  • First generic model for fitting distributions (arnaudon - ede3b08)

  • Many updates (arnaudon - 2fb3ad9)

  • Tmp state (Alexis Arnaudon - 72109b6)

  • Many updates (arnaudon - 8541d6e)

  • Better models + plot diff diameters (arnaudon - 67dc45d)

  • Better integration of sequential fits (Alexis Arnaudon - 075cd44)

  • Minor modifs (Alexis Arnaudon - 6be2f2f)

  • Small bug in reading neurons from folder (Alexis Arnaudon - 8fcabed)

  • Generation of diameters, first commit (arnaudon - 60195ec)

  • Add cumulative plot wrt a metric and create respective app (Eleftherios Zisis - c5aae65)

  • Apical sort of works + many small things (Alexis Arnaudon - b1e07b2)

  • Taper + small improvements (arnaudon - fd0beae)

  • Wip, move out of bb5 (arnaudon - 2b7d2e7)

  • Impedance scripts (Alexis Arnaudon - b3fc2c8)

  • Apical stuff + updated analysis plot (Alexis Arnaudon - eea1d93)

  • Astrocytes + small cleanup (arnaudon - e3e37e3)

  • Several minor updates (Alexis Arnaudon - 97f48ae)

  • Several updates to handle small datasets (arnaudon - e6b97be)

  • Separate utils from io and type mappings (Eleftherios Zisis - 137652b)

  • Neuron name + spaces (Alexis Arnaudon - 2fdda0e)

  • Add relative error plot for cumulative distributions (Eleftherios Zisis - eada493)

  • Latest updates (arnaudon - 7577d3b)

  • Small updates (arnaudon - 879ff72)

  • Bb5 latest version (arnaudon - 8a3c94f)

  • Update to fit region_grower (Alexis Arnaudon - 454b603)

  • Can handle folder without neuronDB.xml file (arnaudon - 82ca224)

  • Morphometrics script (arnaudon - 6a906e7)

  • Update for build_diameter and sequential (Alexis Arnaudon - a07a1a0)

  • Astrocyte example (Alexis Arnaudon - 9f67d80)

  • Test+small bug (Alexis Arnaudon - abe623f)

  • Small updates (arnaudon - d5673b6)

  • Small things (Alexis Arnaudon - 2a90b13)

  • Small update for convergence (Alexis Arnaudon - 2fd5534)

  • Trunk taper (not working well!) (alexis arnaudon - 6575868)

  • Git mistake (arnaudon - 9b67cd4)

  • Build_diameter fix with new sequential code (Alexis Arnaudon - aaa3716)

  • Trunk diameter bug (Alexis Arnaudon - 2e6882a)

  • Update click to access functions (Alexis Arnaudon - 2c49735)

  • Cli file (Alexis Arnaudon - 64ee2c0)

  • Test->example (arnaudon - d0aefbd)

  • Small update in morphometrics (arnaudon - eee031a)

  • Gitignore update (Alexis Arnaudon - 2141a64)

  • First release (Alexis Arnaudon - 20ebaef)

  • Apical in test (Alexis Arnaudon - d6d2b85)

  • Small bug (Alexis Arnaudon - 15930a9)

  • Initial empty repository (Dries Verachtert - c7ad947)